As long as you make a transfer code transferring via emulator to phone should work like phone to phone. The code also shouldn't have any sort of time limit so to speak so I would imagine deleting and re-downloading the game should make the code still usable because the account data isn't stored on the phone but the game's servers.
On a side note be careful using emulators for this and/or any other mobile games because some developers have rules against it.
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